Browse entries in the PDBbind-CN Database

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Related entries of code: 3ntp
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1f8aRCSB PDB    PDBbind167aa, >1F8A_1|Chain... *
2itkRCSB PDB    PDBbind167aa, >2ITK_1|Chain... at 99%
2xp3RCSB PDB    PDBbind167aa, >2XP3_1|Chain... at 99%
2xp4RCSB PDB    PDBbind167aa, >2XP4_1|Chain... at 99%
2xp5RCSB PDB    PDBbind167aa, >2XP5_1|Chain... at 99%
2xp6RCSB PDB    PDBbind167aa, >2XP6_1|Chain... at 98%
2xp7RCSB PDB    PDBbind167aa, >2XP7_1|Chain... at 99%
2xp8RCSB PDB    PDBbind167aa, >2XP8_1|Chain... at 99%
2xpaRCSB PDB    PDBbind167aa, >2XPA_1|Chain... at 99%
2xpbRCSB PDB    PDBbind167aa, >2XPB_1|Chain... at 99%
3i6cRCSB PDB    PDBbind123aa, >3I6C_1|Chains... at 95%
3ikdRCSB PDB    PDBbind123aa, >3IKD_1|Chains... at 95%
3ikgRCSB PDB    PDBbind123aa, >3IKG_1|Chains... at 95%
3jyjRCSB PDB    PDBbind123aa, >3JYJ_1|Chains... at 95%
3kabRCSB PDB    PDBbind167aa, >3KAB_1|Chain... at 99%
3kacRCSB PDB    PDBbind123aa, >3KAC_1|Chains... at 96%
3kadRCSB PDB    PDBbind167aa, >3KAD_1|Chain... at 98%
3kafRCSB PDB    PDBbind167aa, >3KAF_1|Chain... at 98%
3kagRCSB PDB    PDBbind167aa, >3KAG_1|Chain... at 99%
3kahRCSB PDB    PDBbind167aa, >3KAH_1|Chain... at 99%
3kaiRCSB PDB    PDBbind167aa, >3KAI_1|Chain... at 99%
3kceRCSB PDB    PDBbind167aa, >3KCE_1|Chain... at 99%
3odkRCSB PDB    PDBbind167aa, >3ODK_1|Chain... at 99%
3oobRCSB PDB    PDBbind163aa, >3OOB_1|Chain... at 99%
3tc5RCSB PDB    PDBbind166aa, >3TC5_1|Chain... at 97%
4tyoRCSB PDB    PDBbind123aa, >4TYO_1|Chains... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3ntp
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePeptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Ligand NameRZD
EC.Number E.C.5.2.1.8
Resolution 1.76(Å)
Affinity (Kd/Ki/IC50)IC50=12uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Biochemistry Vol. 50: pp. 9545-9550
Ligand Properties
Formula C20H31N4O6P
Molecular Weight 454.457
Exact Mass 454.198
No. of atoms 62
No. of bonds 64
Polar Surface Area 161.94
LOGP Value -2.63      (Computed with XLOGP3)
1.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13526  
Entrez Gene IDNCBI Entrez Gene ID: 5300  
ASDInformation of known allosteric effects of PDB entries
 
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