Browse entries in the PDBbind-CN Database

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Related entries of code: 4k3r
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3d1eRCSB PDB    PDBbind366aa, >3D1E:B|PDBID|CHAIN|... at 100%
3d1fRCSB PDB    PDBbind366aa, >3D1F:B|PDBID|CHAIN|... at 100%
3d1gRCSB PDB    PDBbind366aa, >3D1G:B|PDBID|CHAIN|... at 100%
3q4jRCSB PDB    PDBbind366aa, >3Q4J:F|PDBID|CHAIN|... at 100%
3q4kRCSB PDB    PDBbind366aa, >3Q4K:B|PDBID|CHAIN|... at 100%
3q4lRCSB PDB    PDBbind368aa, >3Q4L:B|PDBID|CHAIN|... at 100%
3qsbRCSB PDB    PDBbind366aa, >3QSB:B|PDBID|CHAIN|... at 100%
4k3kRCSB PDB    PDBbind366aa, >4K3K:B|PDBID|CHAIN|... at 100%
4k3lRCSB PDB    PDBbind366aa, >4K3L:B|PDBID|CHAIN|... at 100%
4k3mRCSB PDB    PDBbind366aa, >4K3M:B|PDBID|CHAIN|... at 100%
4k3oRCSB PDB    PDBbind366aa, >4K3O:B|PDBID|CHAIN|... at 100%
4k3pRCSB PDB    PDBbind366aa, >4K3P:B|PDBID|CHAIN|... at 100%
4k3qRCSB PDB    PDBbind366aa, >4K3Q:B|PDBID|CHAIN|... at 100%
4mjpRCSB PDB    PDBbind366aa, >4MJP:B|PDBID|CHAIN|... at 100%
4mjqRCSB PDB    PDBbind366aa, >4MJQ:B|PDBID|CHAIN|... at 100%
4mjrRCSB PDB    PDBbind366aa, >4MJR:B|PDBID|CHAIN|... at 100%
4n98RCSB PDB    PDBbind366aa, >4N98:B|PDBID|CHAIN|... at 100%
4n99RCSB PDB    PDBbind366aa, >4N99:B|PDBID|CHAIN|... at 100%
4n9aRCSB PDB    PDBbind366aa, >4N9A:B|PDBID|CHAIN|... at 100%
4ovfRCSB PDB    PDBbind366aa, >4OVF:B|PDBID|CHAIN|... at 100%
4ovgRCSB PDB    PDBbind366aa, >4OVG:B|PDBID|CHAIN|... at 100%
4ovhRCSB PDB    PDBbind366aa, >4OVH:B|PDBID|CHAIN|... at 100%
4pnuRCSB PDB    PDBbind366aa, >4PNU:B|PDBID|CHAIN|... at 100%
4pnwRCSB PDB    PDBbind366aa, >4PNW:B|PDBID|CHAIN|... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a7cRCSB PDB    PDBbind6-mer
1elrRCSB PDB    PDBbind6-mer
1guiRCSB PDB    PDBbind6-mer
1gvxRCSB PDB    PDBbind6-mer
1gwmRCSB PDB    PDBbind6-mer
1k9rRCSB PDB    PDBbind6-mer
1lybRCSB PDB    PDBbind6-mer
1njtRCSB PDB    PDBbind6-mer
1okvRCSB PDB    PDBbind6-mer
1ol1RCSB PDB    PDBbind6-mer
1ol2RCSB PDB    PDBbind6-mer
1q4kRCSB PDB    PDBbind6-mer
1rhkRCSB PDB    PDBbind6-mer
1sldRCSB PDB    PDBbind6-mer
1smeRCSB PDB    PDBbind6-mer
1strRCSB PDB    PDBbind6-mer
1urcRCSB PDB    PDBbind6-mer
1xt3RCSB PDB    PDBbind6-mer
1ym2RCSB PDB    PDBbind6-mer
1zfpRCSB PDB    PDBbind6-mer
2h65RCSB PDB    PDBbind6-mer
2h6tRCSB PDB    PDBbind6-mer
2hobRCSB PDB    PDBbind6-mer
2itkRCSB PDB    PDBbind6-mer
2l65RCSB PDB    PDBbind6-mer
2oqsRCSB PDB    PDBbind6-mer
2q6fRCSB PDB    PDBbind6-mer
2qzxRCSB PDB    PDBbind6-mer
2r0zRCSB PDB    PDBbind6-mer
2w76RCSB PDB    PDBbind6-mer
2x6xRCSB PDB    PDBbind6-mer
3avzRCSB PDB    PDBbind6-mer
3aw0RCSB PDB    PDBbind6-mer
3bv9RCSB PDB    PDBbind6-mer
3driRCSB PDB    PDBbind6-mer
3eysRCSB PDB    PDBbind6-mer
3fv3RCSB PDB    PDBbind6-mer
3fwvRCSB PDB    PDBbind6-mer
3h6zRCSB PDB    PDBbind6-mer
3hikRCSB PDB    PDBbind6-mer
3iquRCSB PDB    PDBbind6-mer
3iqvRCSB PDB    PDBbind6-mer
3kd7RCSB PDB    PDBbind6-mer
3luoRCSB PDB    PDBbind6-mer
3nthRCSB PDB    PDBbind6-mer
3oldRCSB PDB    PDBbind6-mer
3pslRCSB PDB    PDBbind6-mer
3q4jRCSB PDB    PDBbind6-mer
3q4kRCSB PDB    PDBbind6-mer
3q4lRCSB PDB    PDBbind6-mer
3r5jRCSB PDB    PDBbind6-mer
3r6gRCSB PDB    PDBbind6-mer
3rjmRCSB PDB    PDBbind6-mer
3sm1RCSB PDB    PDBbind6-mer
3snaRCSB PDB    PDBbind6-mer
3snbRCSB PDB    PDBbind6-mer
3sncRCSB PDB    PDBbind6-mer
3sndRCSB PDB    PDBbind6-mer
3u51RCSB PDB    PDBbind6-mer
3ux0RCSB PDB    PDBbind6-mer
3wqwRCSB PDB    PDBbind6-mer
3zmtRCSB PDB    PDBbind6-mer
3zmuRCSB PDB    PDBbind6-mer
3zmvRCSB PDB    PDBbind6-mer
3zmzRCSB PDB    PDBbind6-mer
3zn0RCSB PDB    PDBbind6-mer
3zn1RCSB PDB    PDBbind6-mer
4a0jRCSB PDB    PDBbind6-mer
4apoRCSB PDB    PDBbind6-mer
4b3bRCSB PDB    PDBbind6-mer
4b4qRCSB PDB    PDBbind6-mer
4b8yRCSB PDB    PDBbind6-mer
4c4nRCSB PDB    PDBbind6-mer
4dgbRCSB PDB    PDBbind6-mer
4er2RCSB PDB    PDBbind6-mer
4exhRCSB PDB    PDBbind6-mer
4fr3RCSB PDB    PDBbind6-mer
4fysRCSB PDB    PDBbind6-mer
4fz3RCSB PDB    PDBbind6-mer
4gyeRCSB PDB    PDBbind6-mer
4gzfRCSB PDB    PDBbind6-mer
4ifiRCSB PDB    PDBbind6-mer
4iknRCSB PDB    PDBbind6-mer
4j09RCSB PDB    PDBbind6-mer
4j77RCSB PDB    PDBbind6-mer
4j79RCSB PDB    PDBbind6-mer
4j86RCSB PDB    PDBbind6-mer
4j8bRCSB PDB    PDBbind6-mer
4jj7RCSB PDB    PDBbind6-mer
4jj8RCSB PDB    PDBbind6-mer
4jjeRCSB PDB    PDBbind6-mer
4jr0RCSB PDB    PDBbind6-mer
4k3oRCSB PDB    PDBbind6-mer
4k3pRCSB PDB    PDBbind6-mer
4k3qRCSB PDB    PDBbind6-mer
4ny3RCSB PDB    PDBbind6-mer
4o9wRCSB PDB    PDBbind6-mer
4ou3RCSB PDB    PDBbind6-mer
4tszRCSB PDB    PDBbind6-mer
4tt2RCSB PDB    PDBbind6-mer
4wk2RCSB PDB    PDBbind6-mer
4wvtRCSB PDB    PDBbind6-mer
4x9rRCSB PDB    PDBbind6-mer
4x9vRCSB PDB    PDBbind6-mer
4ynlRCSB PDB    PDBbind6-mer
5a2iRCSB PDB    PDBbind6-mer
5a2jRCSB PDB    PDBbind6-mer
5a2kRCSB PDB    PDBbind6-mer
5e1bRCSB PDB    PDBbind6-mer
5e1dRCSB PDB    PDBbind6-mer
5e1mRCSB PDB    PDBbind6-mer
5e1oRCSB PDB    PDBbind6-mer
5epkRCSB PDB    PDBbind6-mer
5eplRCSB PDB    PDBbind6-mer
5eq0RCSB PDB    PDBbind6-mer
5fotRCSB PDB    PDBbind6-mer
5fouRCSB PDB    PDBbind6-mer
5fovRCSB PDB    PDBbind6-mer
5fowRCSB PDB    PDBbind6-mer
5foxRCSB PDB    PDBbind6-mer
5fpkRCSB PDB    PDBbind6-mer
5gwzRCSB PDB    PDBbind6-mer
5hvpRCSB PDB    PDBbind6-mer
5izfRCSB PDB    PDBbind6-mer
5l7kRCSB PDB    PDBbind6-mer
5lrgRCSB PDB    PDBbind6-mer
5lrjRCSB PDB    PDBbind6-mer
5lrkRCSB PDB    PDBbind6-mer
5lsoRCSB PDB    PDBbind6-mer
5tpcRCSB PDB    PDBbind6-mer
5w94RCSB PDB    PDBbind6-mer
5y24RCSB PDB    PDBbind6-mer
6aprRCSB PDB    PDBbind6-mer
6aszRCSB PDB    PDBbind6-mer
6at0RCSB PDB    PDBbind6-mer
6cdgRCSB PDB    PDBbind6-mer
6cgtRCSB PDB    PDBbind6-mer
6do4RCSB PDB    PDBbind6-mer
6do5RCSB PDB    PDBbind6-mer
6dubRCSB PDB    PDBbind6-mer
6eqxRCSB PDB    PDBbind6-mer
7hvpRCSB PDB    PDBbind6-mer

Entry Information
PDB ID4k3r
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA polymerase III subunit beta
Ligand Name6-mer
EC.Number E.C.2.7.7.7
Resolution 1.86(Å)
Affinity (Kd/Ki/IC50)Kd=259.1uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) J.Med.Chem. Vol. 56: pp. 8665-8673
Ligand Properties
Formula C26H47N6O10
Molecular Weight 603.686
Exact Mass 603.335
No. of atoms 89
No. of bonds 88
Polar Surface Area 270.93
LOGP Value -1.28      (Computed with XLOGP3)
-0.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 25
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A988  
Entrez Gene IDNCBI Entrez Gene ID: 948218  
ASDInformation of known allosteric effects of PDB entries

 
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