Browse entries in the PDBbind-CN Database

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Related entries of code: 5bnj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3rgfRCSB PDB    PDBbind285aa, >3RGF_2|Chain... at 100%
4crlRCSB PDB    PDBbind285aa, >4CRL_2|Chain... at 100%
4f6sRCSB PDB    PDBbind287aa, >4F6S_2|Chain... *
4f6uRCSB PDB    PDBbind287aa, >4F6U_2|Chain... at 100%
4f6wRCSB PDB    PDBbind287aa, >4F6W_2|Chain... at 100%
4f70RCSB PDB    PDBbind287aa, >4F70_2|Chain... at 100%
4f7jRCSB PDB    PDBbind287aa, >4F7J_2|Chain... at 100%
4f7lRCSB PDB    PDBbind287aa, >4F7L_2|Chain... at 100%
4f7nRCSB PDB    PDBbind287aa, >4F7N_2|Chain... at 100%
5ceiRCSB PDB    PDBbind287aa, >5CEI_2|Chain... at 100%
5fgkRCSB PDB    PDBbind266aa, >5FGK_2|Chain... at 100%
5hbeRCSB PDB    PDBbind266aa, >5HBE_2|Chain... at 100%
5hbhRCSB PDB    PDBbind270aa, >5HBH_2|Chain... at 99%
5hbjRCSB PDB    PDBbind270aa, >5HBJ_2|Chain... at 99%
5hvyRCSB PDB    PDBbind287aa, >5HVY_2|Chain... at 100%
5i5zRCSB PDB    PDBbind266aa, >5I5Z_2|Chain... at 100%
5icpRCSB PDB    PDBbind267aa, >5ICP_2|Chain... at 100%
5idnRCSB PDB    PDBbind267aa, >5IDN_2|Chain... at 100%
5idpRCSB PDB    PDBbind268aa, >5IDP_2|Chain... at 100%
5xqxRCSB PDB    PDBbind263aa, >5XQX_2|Chain... at 100%
5xs2RCSB PDB    PDBbind263aa, >5XS2_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5bnj
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCyclin-dependent kinase 8, CDK8/CYCC
Ligand Name4TV
EC.Number E.C.2.7.11.22
Resolution 2.64(Å)
Affinity (Kd/Ki/IC50)Kd=2nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Nat.Chem.Biol. Vol. 11: pp. 973-980
Ligand Properties
Formula C23H24ClN5O
Molecular Weight 421.923
Exact Mass 421.167
No. of atoms 54
No. of bonds 58
Polar Surface Area 63.05
LOGP Value 2.89      (Computed with XLOGP3)
4.30      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P24863  P49336  
Entrez Gene IDNCBI Entrez Gene ID: 892  1024  
ASDInformation of known allosteric effects of PDB entries

 
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